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  1. Primer-blast tries to find target-specific primers by placing candidate primers on unique template regions that are not similar to other targets.

  2. Primer BLAST performs only a specificity check when a target template and both primers are provided. In the Primer Pair Specificity Checking Parameters section, select the appropriate source Organism and the smallest Database that is likely to contain the target sequence.

  3. Primer-BLAST was developed at NCBI to help users make primers that are specific to intended PCR target.

  4. Learn how to use Primer-BLAST to design primers for different purposes and scenarios, such as human transcripts, SNPs, and cross-species primers. Follow the step-by-step instructions and screenshots for each example and check your results.

  5. Primer-BLAST allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers. Primer-BLAST also supports placing primers based on exon/intron locations and excluding single nucleotide polymorphism (SNP) sites in primers.

  6. 14 paź 2022 · Primer-BLAST combines Primer3 and NCBI BLAST to design primers and identify targets for PCR amplification. It can check primer and template Tm, secondary structure, self-complementarity, and potential off-target matches.

  7. 22 wrz 2023 · Primer-BLAST is a combination of Primer3, a popular primer designing tool, and NCBI BLAST. Primer-BLAST has two basic modes. Design primers to specifically amplify a template sequence or a set of related templates from a background nucleic acid population (BLAST database).

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