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  1. Primer-blast tries to find target-specific primers by placing candidate primers on unique template regions that are not similar to other targets.

  2. Go to the Primer BLAST submission form. Enter the target sequence in FASTA format or an accession number of an NCBI nucleotide sequence in the PCR Template section of the form. If the NCBI mRNA reference sequence accession number is used, the tool will automatically design primers that are specific to that splice variant.

  3. Learn how to use Primer-BLAST to design primers for human, whale and other sequences. Follow the steps and screenshots for different scenarios and options.

  4. Primer-BLAST was developed at NCBI to help users make primers that are specific to intended PCR target.

  5. 16 paź 2022 · Learn how to use the Primer-BLAST tool to design and check PCR primers for various templates and databases. The web page explains the input form sections, parameters, and examples for primer design and specificity checking.

  6. 22 wrz 2023 · Primer-BLAST combines Primer3 and NCBI BLAST to design primers and identify targets for PCR and sequencing. Learn how to use Primer-BLAST modes, features, and options in this workshop.

  7. Allow primers to amplify mRNA splice variants. This will make it much easier to find gene-specific primers if you do not need to distinguish between splice variants. Specify an organism for database search if you are only amplifying DNA from a specific organism.

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