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  1. OligoEvaluator™ is easy to use: select DNA or RNA, paste your sequence, and click calculate for the OligoEvaluator™ tool to return values. All reported properties are available for export to a convenient Excel template.

  2. Unlike most other tools or servers, PROTEUS2 bundles signal peptide identification, transmembrane helix prediction, transmembrane β-strand prediction, secondary structure prediction (for soluble proteins) and homology modeling (i.e. 3D structure generation) into a single prediction pipeline.

  3. I-TASSER (Iterative Threading ASSEmbly Refinement) is a hierarchical approach to protein structure prediction and structure-based function annotation. It first identifies structural templates from the PDB by multiple threading approach LOMETS, with full-length atomic models constructed by iterative template-based fragment assembly simulations.

  4. 14 paź 2024 · AF2 structure prediction can be improved by providing templates, which are known structures of proteins that have sequence similarity to the query. To detect templates, ColabFold first...

  5. 23 cze 2021 · In this paper, we present our latest open-source protein tertiary structure prediction system—MULTICOM2, an integration of template-based modeling (TBM) and template-free modeling (FM)...

  6. tm.life.nthu.edu.tw › indexTm Predictor

    Tm Predictor P.C. Lyu Lab., Institute of Bioinformatics and Structural Biology, National Tsing-Hua University, Hsin-Chu, Taiwan . Please Input the Protein Sequence :(plain text) Melting Temperature Prediction. Tm Index . Predited Tm >1 >65℃ <0 <55℃ 0~1. 55℃~65℃ Melting Temperature Index (TI) Mail to ...

  7. 8 paź 2004 · We have developed a new scoring function, the template modeling score (TM-score), to assess the quality of protein structure templates and predicted full-length models by extending the approaches used in Global Distance Test (GDT) 1 and MaxSub. 2 First, a protein size-dependent scale is exploited to eliminate the inherent protein size ...

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