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18 lis 2024 · We updated gene expression abundance data with 80 RNA-sequencing datasets and to facilitate gene function discovery, performed gene coexpression resulting in 39 coexpression modules that capture highly connected sets of co-regulated genes.
31 lip 2020 · In the scope of the project, we aim to build an API to solve the problem of collecting and managing gene and gene products information from different sources. The PyRice package is developed to run remote queries over 10 databases and web applications so far.
The third-generation sequencing (TGS, also called long-read sequencing, LRS) helps us assemble more high-quality genomes and construct more complete pan-genomes. Here are codes of the article " Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes ".
The first rice genome was sequenced in 2002, making it the first crop genome to be ... genomic location, family ID, gene structure, function annotations and sequences. As an example EC_v6.g004014 is shown ... Tanaka T. et al. (2013) Rice annotation project database (RAP-DB): an integrative and interactive database for rice genomics. Plant Cell ...
3 sie 2023 · Here, we construct a syntelog-based rice pan-genome by integrating and merging 74 high-accuracy genomes based on long-read sequencing, encompassing all ecotypes and taxa of Oryza sativa and Oryza rufipogon.
The Rice Genome Annotation Project Database and Resource is a National Science Foundation project and provides sequence and annotation data for the rice genome. This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 12 rice chromosomes.
28 maj 2014 · First targets include curation of 3K rice genomes data and other public data, definition of reference genomes, design and archival of phenotyping datasets, and a web-based interface, or portal, and tools for population structure, genome-wide association studies and diversity browsing.
