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  1. Primer-BLAST uses Primer3 and BLAST to design primers for PCR based on a template sequence. You can enter your own primers, set parameters, and check primer specificity and melting temperatures.

    • Tips for Finding Specific Primers

      Try "re-search for specific primers" feature on Primer-BLAST...

    • Publication

      Primer-BLAST was developed at NCBI to help users make...

    • Blast

      The Basic Local Alignment Search Tool (BLAST) finds regions...

    • PubMed

      Primer-BLAST allows users to design new target-specific...

  2. The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches.

  3. 18 cze 2012 · Primer-BLAST allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers. Primer-BLAST also supports placing primers based on exon/intron locations and excluding single nucleotide polymorphism (SNP) sites in primers.

  4. 18 cze 2012 · Primer-BLAST allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers. Primer-BLAST also supports placing primers based on exon/intron locations and excluding single nucleotide polymorphism (SNP) sites in primers.

  5. Primer design is a crucial initial step in any experiment utilizing PCR to target and amplify a known nucleotide sequence of interest. Properly designed primers will increase PCR amplification efficiency as well as isolate the targeted sequence of interest with higher specificity.

  6. Primer-BLAST Results Help. Primer-BLAST was developed at NCBI to help users make primers that are specific to intended PCR target. It uses Primer3 to design PCR primers and then uses BLAST and global alignment algorithm to screen primers against user-selected database in order to avoid primer pairs (all combinations including forward-reverse ...

  7. Primers are critical components of any PCR assay, as they are the main determinants of its specificity, sensitivity, and robustness.

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