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30 paź 2021 · All experimental GO annotations for proteins in the tree are overlaid on the tree, and an expert uses a variety of information to identify branches where functions were most likely gained and lost; this information includes the phylogenetic tree (especially gene duplication events), taxonomic groups, and presence/absence of protein domains and ...
8 lis 2018 · We have created a completely new PANTHER GO-slim and associated annotations, and improved the PANTHER Protein Class for protease and protease inhibitor families. In the gene list analysis tools, we have developed additional software to enable users to easily analyze lists from over 900 genomes (up from 104 in our last update).
The PANTHER knowledgebase can be downloaded or accessed via an extensive API. In addition, PANTHER provides software tools to facilitate the application of the knowledgebase to common protein sequence analysis tasks: exploring an annotated genome by gene function; performing “enrichment analysis.
8 wrz 2024 · Tools to curate, browse, search, visualize and download both the ontology and annotations. Includes bioinformatic guides (Notebooks) and simple API access to integrate the GO into your research.
8 gru 2020 · PANTHER GO-slim update. The new PANTHER GO-slim was updated from the latest phylogenetic annotations provided by the GO Phylogenetic Annotation project . It contains 3336 terms, with 2234 biological process, 557 molecular function and 542 cellular component terms.
17 lis 2015 · Gene annotations, iTAG3.2 gene ontology (GO) terms, were obtained from the PANTHER classification system version 10 (Mi et al., 2016). GO enrichment analysis was performed for GO Biological...
30 paź 2021 · Protein Analysis THrough Evolutionary Relationships (PANTHER; http://pantherdb.org) is a publicly available, user-focused knowledgebase that stores the results of an extensive phylogenetic reconstruction pipeline that includes computational and manual processes and quality control steps.
