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14 lut 2018 · The Predict a Secondary Structure server combines four separate prediction and analysis algorithms: calculating a partition function, predicting a minimum free energy (MFE) structure, finding structures with maximum expected accuracy, and pseudoknot prediction.
6 paź 2022 · This paper presents RNAstructure, a software package for RNA secondary structure prediction and analysis based on minimum free-energy calculation.
18 maj 2022 · Abstract. RNA secondary structures can carry out essential cellular functions alone or interact with one another to form the hierarchical tertiary structures. Experimental structure identification approa ches can show the in vitro structures of RNA molecules. However, they usually have limits in the resolution and are costly.
This example illustrates how to use the rnafold and rnaplot functions to predict and plot the secondary structure of an RNA sequence.
13 sie 2008 · The ability to access, search and analyse secondary structures of a large set of known RNA molecules is very important for deriving improved RNA energy models, for evaluating computational predictions of RNA secondary structures and for a better understanding of RNA folding.
26 cze 2024 · Competing RNA secondary structures determine the inclusion of alternative exon B by bringing together splice sites and splicing regulator sequences through specific base pairings. 7SK RNA ...
21 mar 2018 · The secondary structure of an RNA sequence is formed when the RNA strand folds onto itself by forming hydrogen bonds between G-C, A-U, and G-U. So predicting RNA secondary structure return to predict the different hydrogen liaisons in an RNA molecule using only the primary structure of the sequence.
