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This interactive brain model is powered by the Wellcome Trust and developed by Matt Wimsatt and Jack Simpson; reviewed by John Morrison, Patrick Hof, and Edward Lein. Structure descriptions were written by Levi Gadye and Alexis Wnuk and Jane Roskams .
The anatomical location of each cell type has been annotated using a comprehensive brain-wide MERFISH dataset with a total of ~4 million segmented and QC-passed cells, probed with a 500-gene panel and registered to the Allen Mouse Brain Common Coordinate Framework (CCF v3).
Anatomy. Reference atlases provide standard anatomical spaces across species and development. Explore. Cell Types. View data-driven classifications and key publications analyzing cell types of the mammalian brain. Explore. Circuits & Behavior. Data and publications from the Allen Brain Observatory reveal new complexity of neuronal circuitry ...
Top 100 Brain Structures. Can you name these brain structures? Normal aging: structure and function. Normal aging: coronal plane. Vascular anatomy. Cerebrovascular Disease (stroke or "brain attack"): NEW: Multiple embolic infarction, diffusion and FLAIR imaging. Acute stroke: speech arrest.
The anatomical labels were digitized based on the Allen ontology, and a web-interface was created for easy visualization. These labels provide a resource to isolate and identify mouse brain anatomical structures. Access anatomical labels here: http://kimlab.io/brain-map/atlas/
Anatomy. Among our most widely cited resources, these neuroanatomical atlases include mouse brain & spinal cord, and human brain across multiple developmental timepoints. Below are resources for our reference atlases and accompanying software tools.
These anatomical reference atlases illustrate the adult mouse brain in coronal and sagittal planes of section. They are the spatial framework for datasets such as in situ hybridization, cell projection maps, and in vitro cell characterization.
