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  1. molview.orgMolView

    MEP surface lucent/opaque: calculates and projects molecular electrostatic potential on a translucent or opaque van der Waals surface. Charge: calculates and projects atomic charge as text label and white to atom color gradient. Bond dipoles: calculates and draws individual bond dipoles.

  2. Online chemical structure editor. DrawChemistry — is an interface created with the help of professional chemists. The editor lets you create structural formula online and save it as either .mol or .png.

  3. 3D Molecule Builder. Center molecule. Start from scratch. Select tool. Add atom. Remove atom. Select element. Select bond count.

  4. Use the Chemical Sketch tool to draw or edit a molecule. The resulting SMILES or InChI string may be used to search for matching molecules in the PDB Chemical Component Dictionary. Note that matches will include any chemical component in the dictionary, including polymeric ones like Alanine or Adenosine. Help.

  5. An interactive simulation by PhET that allows users to build molecules and understand their structures.

  6. The three different ways to draw organic molecules include Kekulé Formulas, Condensed Formulas, and Skeletal structures (also called line-bond structures or line formulas). During this course, you will view molecules written in all three forms.

  7. Chemical structure is determined by the three-dimensional network of bonds between atoms in a molecule. Use Wolfram|Alpha to visualize structures in 3D with a space-filling model, where atoms are shown as spheres proportional to their van der Waals radius; with a ball-and-stick model; or as a skeletal structure.

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