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1. mouse.brain-map.org › static › atlasReference Atlas :: Allen Brain Atlas: Mouse Brain

   mouse.brain-map.org › static › atlas

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   Explore the anatomic reference atlas of the mouse brain with 132 coronal and 21 sagittal sections. The atlas is annotated with a hierarchical taxonomy of brain structures and provides links to related studies and strains.

   • Help

     Allen Mouse Brain Connectivity Atlas Brainspan Atlas of the...

   • Brain Explorer

     Link to associated gene metadata on the Allen Mouse Brain...

   • Documentation

     Documentation: Allen Mouse Brain Atlas Document Description...

   • Coronal

     Coronal - Reference Atlas :: Allen Brain Atlas: Mouse Brain

   • Sagittal

     Interactive Atlas Viewer :: Atlas Viewer - Allen Brain Atlas...

   • Sleep

     ISH Data: Reference Atlas: AGEA: Brain Explorer: Sleep...

   • ISH Data

     ISH Data - Reference Atlas :: Allen Brain Atlas: Mouse Brain

   • ALLEN Mouse Brain Atlas

     An interactive relational atlas based on spatial...

2. portal.brain-map.org › overviewOverview - brain-map.org - Allen Brain Atlas

   portal.brain-map.org › overview

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   Explore the Allen Institute for Brain Science's open data and tools for neuroscience research. Find the Allen Mouse Brain Atlas, a genome-wide map of gene expression in the adult mouse brain.

3. mouse.brain-map.org › ageaAGEA :: Allen Brain Atlas: Mouse Brain

   mouse.brain-map.org › agea

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   AGEA is a tool to explore the genetic architecture of the mouse brain based on spatial correlations of gene expression data. You can select a seed point, a mode, and a structure to visualize the transcriptome similarity, neural subdivisions, or gene clusters in the brain.

4. mouse.digital-brain.cnMouse Brain Atlas

   mouse.digital-brain.cn

   Explore the mouse brain data and atlas of single-neuron morphology, single-cell spatial transcriptomics, and hippocampus. Find genes, cell types, and spatial distribution across the mouse brain using fMOST, snRNA-seq, and Stereo-seq techniques.

5. atlas.brain-map.org › atlasInteractive Atlas Viewer :: Atlas Viewer - Allen Brain Atlas

   atlas.brain-map.org › atlas

   Alternative Background Images; Nissl; Atlas; Mouse Atlases; Adult, 3D Coronal; P56, Coronal; P56, Sagittal; Developing Mouse Atlases; P56, Sagittal; P14, Sagittal

6. scalablebrainatlas.incf.org › mouse › ABA_v3Scalable Brain Atlas - Allen Mouse Brain Common Coordinate...

   scalablebrainatlas.incf.org › mouse › ABA_v3

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   About this atlas. The Allen Reference Atlas is created by the Allen Institute for Brain Science. It is published on the web (3D Coronal version) and in print: H.W. Dong, The Allen Reference Atlas, (Book + CD-ROM): A Digital Color Brain Atlas of the C57BL/6J Male Mouse, Wiley, 2008.

7. mouse.brain-map.orgISH Data :: Allen Brain Atlas: Mouse Brain

   mouse.brain-map.org

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   ISH Data: Reference Atlas: AGEA: Brain Explorer: Related Studies Sleep; Mouse Strains; Documentation: Help