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Runs the fgenesh gene prediction tool on the sequence in the provided fasta file.
This repository contains structured documentation for Fgenesh++, including links to existing documentation and community resources, as well as a description of the optimisations achieved at the following HPC centres: No description, website, or topics provided. Contribute to AustralianBioCommons/fgenesh development by creating an account on GitHub.
This repository contains structured documentation for Fgenesh++, including links to existing documentation and community resources, as well as a description of the optimisations achieved at the following HPC centres: Contribute to AustralianBioCommons/fgenesh development by creating an account on GitHub.
FGENESH - Program for predicting multiple genes in genomic DNA sequences . FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the table below. In recent rice genome sequencing projects, it was cited "the most successful (gene finding) program (Yu et al.
Galaxy Australia is capable of conducting genome annotation using the FgenesH++ annotation tool. Users need to apply for access to this tool, please see service notes here and apply for access here.
Fgenesh++ is a bioinformatics pipeline for automatic prediction of genes in eukaryotic genomes. It can produce fully automated genome annotations of a quality similar to manual annotation, and is extremely fast compared to some other automated genome annotation pipelines.
7 sie 2006 · There are three main steps in running the pipeline: step 1 involves mapping known mRNAs/cDNAs (for example, from RefSeq) to genomic sequences; step 2 involves the prediction of genes based on homology to known proteins (for example, from NR); and step 3 involves ab initio gene prediction in regions having neither mapped mRNAs nor genes ...
