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10 sie 2015 · Fuelled by a number of genetic, biochemical and fluorescence-based techniques, our ability to map bacterial protein networks and to investigate their functions has increased dramatically in...
On a set of 42 bacterial genomes of different sizes, and with reasonably separated evolutionary trajectories, we investigate three issues: i) whether the distribution of connectivities changes between PPI subnetworks of essential and nonessential genes; ii) how gene conservation, measured both by the evolutionary retention index (ERI) and by ...
1 kwi 2018 · Correlations, linking genome structure to gene activity, have been established by combining information from chromosome conformation capture, chromatin immunoprecipitation (ChIP) data of DNA-binding proteins and gene expression profiles.
22 sty 2021 · These visual representations capture the inter-genic distance, strand direction, gene size, functional relatedness, and gene neighborhood conservation, which are the most prominent operon features mentioned in the literature.
10 maj 2013 · We here show from analytical and numerical analysis that the distance between a transcription factor (TF) gene and its target gene drastically affects the speed and reliability of transcriptional regulation in bacterial cells.
11 lip 2018 · Bacterial RNA-binding proteins (RBPs) directly associate with and influence the fate of virtually all cellular transcripts. In this Review, Holmqvist and Vogel discuss our current understanding...
8 cze 2023 · Considering median protein size, proteins are on average smaller in bacteria (270 aa) and archaea (242 aa), compared to eukaryotic proteins (353 aa). Variation in protein length is lower among bacterial and archaeal species (standard deviation 23.3 and 21.3, respectively) than among eukaryotes (standard deviation: 62.5).
