Search results
13 cze 2019 · Here we present VarMap, a web tool for mapping a list of chromosome coordinates to canonical UniProt sequences and associated protein 3D structures, including validation checks, and annotating them with structural information. Availability and implementation. https://www.ebi.ac.uk/thornton-srv/databases/VarMap. Supplementary information.
By doing this type of analysis with more and more genes (e.g., adding in genes D, E, and F and figuring out their relationships to A, B, and C) we can build up linkage maps of entire chromosomes. In linkage maps, you may see distances expressed as centimorgans or map units rather than recombination frequencies.
30 kwi 2024 · genomeToProtein: maps genomic coordinates to positions within the sequence of the eventually encoded protein (s) in the genomic region. The function takes a GRanges as input and returns an IRangesList of the same length, each element ( IRanges) providing the coordinates within the respective protein’s sequence.
10 sty 2022 · The development of pE-MAP and DMS enabled the systematic study of the relationship between genetic interactions and residue distances in a protein structure.
Mapping genetic locations between different coordinate systems is an essential part of much genomic analysis. This is a brief introduction to the SeqMapper module. Note: This uses the coordinate mapper currently available on my branch .
A linkage map (also known as a genetic map) is a table for a species or experimental population that shows the position of its known genes or genetic markers relative to each other in terms of recombination frequency, rather than a specific physical distance along each chromosome.
26 sie 2008 · As protein sequences are generally better conserved than nucleotide sequences, remote homologs can be used as templates, extending the applicability of evidence-based gene recognition methods. However, no tool seems to have been developed so far to simultaneously map and align a number of protein sequences on mammalian-sized genomic sequence.
