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This section focuses first on how we estimate distances, depending upon the level of interest, and then highlights some approaches for visualizing and gaining inferences from the distance matrix itself.
24 maj 2017 · In this simulation study, we analyze the behavior of different genetic distances in Island (null hypothesis) and stepping stone models displaying varying neighborhood sizes.
17 mar 2021 · A distance matrix has to satisfy additional properties in order to correspond to some weighted tree. In fact, there are two models that assume special constraints on the distance matrix: Ultrametric: For all triplets (a, b, c) of leaves, two pairs among them have equal distance, and the third distance is smaller; i.e. the triplet can be ...
29 maj 2024 · Pairwise Distances from Genetic Data Description. This function computes a matrix of distances between pairs of individuals from a matrix or a data frame of genetic data. Usage dist.gene(x, method = "pairwise", pairwise.deletion = FALSE, variance = FALSE) Arguments
Genetic distance is a measure of the genetic divergence between species or between populations within a species, whether the distance measures time from common ancestor or degree of differentiation. Populations with many similar alleles have small genetic distances.
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