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This section focuses first on how we estimate distances, depending upon the level of interest, and then highlights some approaches for visualizing and gaining inferences from the distance matrix itself.
The computation of genetic distances is done by PLINK, via the --distance-matrix option. It creates the already mentioned huge matrix of numbers, saved in a text file dataForPCA.mdist . Go ahead and open it with the text editor of your choice to check it out!
The Geographic Distance Matrix Generator is a platform-independent Java application that implements the same powerful suite of spherical functions as the Perpendicular Distance Calculator to compute all pair wise distances from a simple list of geographic coordinates.
The Inbreeding Calculator by Labgenvet is provided to breeders as a simple and rapid tool for calculating the inbreeding coefficient of an animal based on its pedigree. It is designed to be helpful in performing virtual breeding trials as an aid in making management decisions.
2 kwi 2019 · To identify the genetic underpinnings of such traits, we analyze 722 canine whole genome sequences (WGS), documenting over 91 million single nucleotide and small indels, creating a large...
General actions. Distance: Use t to start phylogenetic distance computation Viewer Mode: Use g to switch between single tree mode or compare mode Left tree (or single mode) Tree Height: Use w to increase or s to decrease Tree Width: Use a to increase or d to decrease Tree Selection: Use q or e to change tree Automatic Collapsing: Use r to fit the tree in the viewer by collapsing and zooming in ...
Distance is a Windows program, featuring a graphical user interface and has a built-in GIS, which can be used for automated survey design. Distance 7.5 also has updated versions of the analysis and spatial modelling engines.
