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The Geographic Distance Matrix Generator is a platform-independent Java application that implements the same powerful suite of spherical functions as the Perpendicular Distance Calculator to compute all pair wise distances from a simple list of geographic coordinates.
11 gru 2023 · --distance is the primary interface to PLINK 1.9's IBS and Hamming distance calculation engine. Output formats By default, --distance causes a lower-triangular tab-delimited text file to be written to plink .dist , and a list of corresponding sample IDs to plink .dist.id .
This section focuses first on how we estimate distances, depending upon the level of interest, and then highlights some approaches for visualizing and gaining inferences from the distance matrix itself.
GenAlEx 6.5 - Genetic Analysis in Excel, is written in Visual Basic for Applications (VBA) within Excel. It is designed as a user-friendly package that allows users to analyse a wide range of population genetic data within a software environment with which most users will be familiar. It can be run on both PC and Macintosh.
In our framework, we have designed two strategies to accelerate the computation based on 1) cell graph coarse-graining, and 2) gene graph sparsification. Briefly, cell graph coarse-graining aims to reduce the cell number by aggregating nearest cells into “meta-cells”.
genalex is a user-friendly cross-platform package that runs within Microsoft Excel, enabling population genetic analyses of codominant, haploid and binary data. Allele frequency-based analyses include heterozygosity, F statistics, Nei's genetic distance, population assignment, probabilities of identity and pairwise relatedness.
28 lut 2006 · Distance-based calculations include amova, principal coordinates analysis (PCA), Mantel tests, multivariate and 2D spatial autocorrelation and twogener. More than 20 different graphs summarize data and aid exploration.
