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1. phylot.biobyte.dephyloT : a phylogenetic tree generator

   phylot.biobyte.de

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   phyloT generates phylogenetic trees based on the NCBI taxonomy or Genome Taxonomy Database. From a list of taxonomic names, identifiers or protein accessions, phyloT will generate a pruned tree in the selected output format.

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     phyloT generates phylogenetic trees based on the NCBI...

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     help. phyloT automatically generates phylogenetic trees...

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     If you do not have a phyloT account, please register...

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     Use this form to create a new phyloT account. Check the...

   • About & Contact

     phyloT database version: 2023.2: NCBI taxonomy nodes: 3 905...

   • Terms & Conditions

     Terms and Conditions ("Terms") Last updated: February 27,...

2. clustering.pythonanywhere.comPhylogenetic Tree Generator

   clustering.pythonanywhere.com

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   Phylogenetic Tree Generator. Number of Rows: Number of Columns: Distance Matrix (numbers in a row "," separated and after each row "space": Taxa/Node Names (comma-separated): Linkage Method: Generate Tree.

3. trex.uqam.ca › indexTrex-online

   trex.uqam.ca › index

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   Paste your distance matrix in the Phylip format into the window (no spaces in the species names; at least one space is required in the end of a species name):

4. iphylo.netiPhylo-The Free Tree Generator and Annotator

   iphylo.net

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   The iPhylo Visual interactively facilitate the display, annotation, and inspection of tree-based structures, including but not limited to phylogenetic and chemical taxonomic trees.

5. molbiol-tools.ca › PhylogenyOnline Analysis Tools - Phylogeny

   molbiol-tools.ca › Phylogeny

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   These tools cover a large range of usage (sequence searching, multiple sequence alignment, model selection, tree inference and tree drawing) and a large panel of standard methods (distance, parsimony, maximum likelihood and Bayesian).

6. isu-molphyl.github.io › EEOB563 › computer_labsLab #3. Distance analysis with PHYLIP and FastME. - GitHub Pages

   isu-molphyl.github.io › EEOB563 › computer_labs

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   To calculate distances from sequence data you use protdist and dnadist commands. protdist calculates a distance matrix from amino acid sequences, under five different models of amino acid substitutions: the Dayhoff PAM matrix, the JTT (Jones-Taylor-Thornton) model, the PMB (Probability Matrix from Blocks) model, Kimura’s distance, and ...

7. www.ebi.ac.uk › jdispatcher › phylogenySimple Phylogeny < EMBL-EBI

   www.ebi.ac.uk › jdispatcher › phylogeny

   This tool provides access to phylogenetic tree generation methods from the ClustalW2 package. Please note this is NOT a multiple sequence alignment tool. To perform a multiple sequence alignment please use one of our MSA tools. Input sequence. Paste your sequence here - or use the example sequence. sp:wap_rat. Use the example. Clear sequence.