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The Geographic Distance Matrix Generator is a platform-independent Java application that implements the same powerful suite of spherical functions as the Perpendicular Distance Calculator to compute all pair wise distances from a simple list of geographic coordinates.
There are a variety of ways to calculate genetic distance, and the main function in this package, gen_dist(), allows a user to choose from five different genetic distances and saves square distance matrices as csv files.
distmat. Create a distance matrix from a multiple sequence alignment ( read the manual ) Unshaded fields are optional and can safely be ignored. ( hide optional fields ) Input section. Select an input sequence. Use one of the following three fields: To access a sequence from a database, enter the USA here:
Calculate genetic distance at population level. Perform a Mantel test to test for IBD. Create Mantel correlograms for the genetic data. Calculate and test Moran’s I for population-level genetic diversity data.
11 gru 2023 · --make-rel is the primary interface to PLINK 1.9's genetic relationship matrix and covariance matrix calculator.
29 maj 2024 · Calculate Genetic Distance for a genind or genclone object. Description These functions are modified from the function dist.genpop to be applicable for distances between individuals.
Calculate Genetic Distance for a genind or genclone object. Source: R/distances.r. These functions are modified from the function dist.genpop to be applicable for distances between individuals.
