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5 dni temu · Phylogenetic comparative tests of predictions from different selective models for the phylogenetic distribution of machine-learnt phenotypes were conducted using the R package SURFACE 51 against a ...
24 cze 2024 · Phylogenetic ANOVA/regression for Procrustes shape variables. Description. Function performs Procrustes ANOVA in a phylogenetic framework and uses permutation procedures to assess statistical hypotheses describing patterns of shape variation and covariation for a set of Procrustes-aligned coordinates. Usage. procD.pgls( f1, phy, Cov = NULL,
14 cze 2024 · Steps To Reproduce. 1, I've loaded the attached fasta file to Mega11 with "Analyze" option as nucleotid, non-protein coding sequence. 2, Then I started the Phylogeny / Construct/Test Neighbor-Joining Tree. 3, I've set the following paramaters:
4 dni temu · CREx: distance matrix.How should the results from the new tables, where the diagonal is zero, be interpreted? Most of the literature I see follows the common intervals where a higher number is more similar as they share more common intervals.
15 cze 2024 · This distance matrix algorithm computes pairwise distances between all points in a dataset, providing a comprehensive measure of similarity or dissimilarity. The algorithm constructs a square matrix where each element represents the distance between two points.
5 dni temu · To check, let’s compute a matrix that gives the divergence depth of the MRCA of each pair of tips on the phylogeny using the ape function cophenetic. d<-cophenetic(pl.tree)/2 (We divide by two because cophenetic gives us the total distance between tips.)
22 cze 2024 · Although analyses on either model fit indicate a significant relationship between tail length and snout-to-vent length (SVL), the GLS coefficients test and ANOVA show how phylogenetic auto-correlation among species augments the OLS-estimated relationship.
