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3 dni temu · The relationship matrix computed by --make-rel/--make-grm-list/--make-grm-bin can be used to reliably identify close relations within a single population, if your MAFs are decent.
10 cze 2024 · The measure of species similarity of research plots used in this scaling is the Jaccard distance matrix 33,34. Moreover, the relationship of the species data with environmental gradients can be...
10 cze 2024 · Testing the impact of distance matrices generated by six distance metrics (Chebyshev, Euclidean, Manhattan, Canberra, Cosine, Sorensen) on SCSMD using 15 datasets. By comparing ARI values, the Chebyshev distance was ultimately selected.
21 cze 2024 · The amino acid sequence genetic distance matrix of GI.3/3039 and GI.3 [P10]/3718 shows a 0% divergence, indicating their complete identity. A plausible scenario could involve the importation of the Spanish genovariant GI.3 [P10]/3718 onto the territory of Russia in 2022.
4 dni temu · Background Wheat landraces are considered a valuable source of genetic diversity for breeding programs. It is useful to evaluate the genetic diversity in breeding studies such as marker-assisted selection (MAS), genome-wide association studies (GWAS), and genomic selection. In addition, constructing a core germplasm set that represents the genetic diversity of the entire variety set is of ...
22 cze 2024 · Function dist.eval provides two tests of a distance matrix: (i) The first test checks whether any pair of sites that share some species have a larger distance than any other pair of sites that do not share any species.
15 cze 2024 · DoubletFinder identifies doublets by generating artificial doublets from existing scRNA-seq data and defining which real cells preferentially co-localize with artificial doublets in gene expression space.
