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6 dni temu · Identity-by-descent. These calculations are not LD-aware. It is usually a good idea to perform some form of LD-based pruning before invoking them. --genome ['gz'] ['rel-check'] ['full'] ['unbounded'] ['nudge'] --ppc-gap <distance in kbs>. --min <minimum PI_HAT value>.
15 lip 2024 · Calculates the genetic distances between either individuals or the levels of any sample specific facets, broken apart by any requested snp level facets. For details on methods, see details. Usage calc_genetic_distances( x, facets = NULL, method = "Edwards", interpolate = "bernoulli" ) Arguments
4 dni temu · y = G β G + X β X + e. for every variant (one at a time), where y is the phenotype vector, G is the genotype/dosage matrix for the current variant, X is the fixed-covariate matrix, and e is the error term subject to least-squares minimization.
6 dni temu · Native text genotype file format for Oxford statistical genetics tools, such as IMPUTE2 and SNPTEST. Should always be accompanied by a .sample file. Loaded with --data/--gen , and produced by " --recode oxford ".
1 sie 2024 · A dataset containing Grantham distances in the format of a matrix. These values were obtained from Table 2, Grantham (1974), \Sexpr [results=rd] {tools:::Rd_expr_doi ("10.1126/science.185.4154.862")}. Usage. grantham_distances_matrix. Format. An object of class matrix (inherits from array) with 20 rows and 20 columns. Source.
16 lip 2024 · In this paper, we present AFIT, a new l -mer statistic vector for each contig, and AFITBin, a novel method for metagenomic binning based on AFIT and a matrix factorization method. To evaluate the performance of the AFIT vector, the t-SNE algorithm is used to compare species clustering based on AFIT and TNF information.
2 dni temu · The Distance Matrix API provides information based on the recommended route between start and end points. You can request these kinds of distance data: Distance for a selected travel mode;...
