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PlantPAN 4.0. The Plant Promoter Analysis Navigator (PlantPAN) provides an informative resource for detecting transcription factor binding sites (TFBSs), corresponding TFs, and other important regulatory elements (CpG islands and tandem repeats) in a promoter or a set of promoters in plants.
The current PlantPAN release (version 3.0) contains 17,230 TFs and 4,703 matrices of TF binding sites among 78 plant species. For optimal use of this database, we recommend to use Google Chrome or Firefox browser and above at 1680 x 1050 resolution.
Gene Search | TF/TFBS Search | Gene Group Analysis | Promoter Analysis | Cross Species. 1. Determine co-occurrence TF and their binding sites within the promoters of input gene group. 2. Regulatory network construction of co-occurrence TFs based on protein-protein interaction.
PlantPAN 3.0 database. Please select transcription factors from the following species: All species Choose species
TF/TFBS Search. Please choose a function of interest: If there are two or more TFs for scanning, please use Search for a list of TFs. If you want to use a protein/nucleotide sequence for searching TFs, please use TF BLAST Search.
PlantPAN 3.0 database. Please select transcription factors from the following species: All species. Choose species. Arabidopsis thaliana. Brachypodium distachyon. Chlamydomonas reinhardtii. Glycine max. Malus domestica.
Step 2. Please specify TF binding motifs: PlantPAN 3.0 database. Please select transcription factors from the following species: All species. Choose species. Arabidopsis thaliana Brachypodium distachyon Chlamydomonas reinhardtii Glycine max Malus domestica Oryza sativa Populus trichocarpa Sorghum bicolor Volvox carteri Zea mays.
Choose species. Please choose a model plant of interest: Arabidopsis thaliana. or Quick Select: Arabidopsis thaliana. Oryza sativa. Zea mays. Glycine max. Solanum lycopersicum.
Please choose a model plant of interest:
PlantPAN 3.0 database. Please select transcription factors from the following species: All species. Choose species. Arabidopsis thaliana. Brachypodium distachyon. Chlamydomonas reinhardtii. Glycine max. Malus domestica.
